{"id":5272,"date":"2015-05-09T00:40:01","date_gmt":"2015-05-08T18:40:01","guid":{"rendered":"http:\/\/www.se.edu\/kfrinkle\/?page_id=5272"},"modified":"2015-05-09T00:40:01","modified_gmt":"2015-05-08T18:40:01","slug":"cs-4973-projects-in-hpc","status":"publish","type":"page","link":"https:\/\/www.se.edu\/kfrinkle\/old-teaching-material\/spring-2015\/cs-4973-projects-in-hpc\/","title":{"rendered":"CS 4973 &#8211; Projects in HPC"},"content":{"rendered":"<div>\n<table width=\"100%\" cellspacing=\"0\" cellpadding=\"0\">\n<tbody>\n<tr valign=\"top\">\n<td width=\"100%\">\n<h3>Course Information:<\/h3>\n<ul>\n<li>Syllabus: view *<a title=\"Syllabus\" href=\"https:\/\/www.se.edu\/kfrinkle\/wp-content\/uploads\/sites\/89\/2015\/01\/CS4973Spring2015syllabus.pdf\" target=\"_blank\" rel=\"noopener\">here<\/a>*<\/li>\n<\/ul>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<div>\n<h3>Course Materials:<\/h3>\n<p>Important Files<\/p>\n<ul>\n<li><a title=\"SSH Secure Shell 3.2.9\" href=\"https:\/\/www.se.edu\/kfrinkle\/wp-content\/uploads\/sites\/89\/2013\/10\/sshsecureshellclient-3.2.9.zip\" target=\"_blank\" rel=\"noopener\">SSH Secure Shell 3.2.9<\/a><\/li>\n<\/ul>\n<p>&nbsp;<br \/>\nLinks<\/p>\n<ul>\n<li><a title=\"Creating a shared directory in Linux\" href=\"http:\/\/joshua14.homelinux.org\/blog\/?p=1383\" target=\"_blank\" rel=\"noopener\">Creating Shared Directories<\/a><\/li>\n<\/ul>\n<p>&nbsp;<br \/>\nGenome Links<\/p>\n<ul>\n<li><a title=\"Harvard PGP\" href=\"http:\/\/www.personalgenomes.org\/harvard\/data\" target=\"_blank\" rel=\"noopener\">Harvard Personal Genome Project<\/a><\/li>\n<li><a title=\"Harvard PGP\" href=\"http:\/\/www.snpedia.com\/index.php\/SNPedia\" target=\"_blank\" rel=\"noopener\">SNPedia<\/a><\/li>\n<\/ul>\n<p>&nbsp;<br \/>\nGenome Documents<\/p>\n<ul>\n<li><a title=\"Genome To-do list\" href=\"https:\/\/www.se.edu\/kfrinkle\/wp-content\/uploads\/sites\/89\/2015\/01\/CS4973Spring2014GeneticProgramList.pdf\" target=\"_blank\" rel=\"noopener\">To Do List for Genome Group<\/a><\/li>\n<\/ul>\n<p>&nbsp;<br \/>\nGenome Programs<\/p>\n<ul>\n<li><a title=\"Full Genome Data Parser\" href=\"https:\/\/www.se.edu\/kfrinkle\/wp-content\/uploads\/sites\/89\/2015\/01\/CS4973Spring2015FormatData.zip\" target=\"_blank\" rel=\"noopener\">Full Genome Data Parser<\/a><\/li>\n<li><a title=\"SNP Hunter (beta)\" href=\"https:\/\/www.se.edu\/kfrinkle\/wp-content\/uploads\/sites\/89\/2015\/01\/CS4973Spring2015MPI_Genome_Pro_v001.zip\" target=\"_blank\" rel=\"noopener\">SNP Hunter (beta)<\/a><\/li>\n<\/ul>\n<p>&nbsp;<br \/>\nPrograms<\/p>\n<ul>\n<li><a title=\"List Generator\/Reader Programs\" href=\"https:\/\/www.se.edu\/kfrinkle\/wp-content\/uploads\/sites\/89\/2014\/04\/ListGenerator.zip\" target=\"_blank\" rel=\"noopener\">List Generator\/Reader Programs<\/a><\/li>\n<li><a title=\"Shell sort zip file\" href=\"https:\/\/www.se.edu\/kfrinkle\/wp-content\/uploads\/sites\/89\/2014\/03\/shell.zip\" target=\"_blank\" rel=\"noopener\">Shell Sort Zip file<\/a><\/li>\n<li><a title=\"HelloWorldCyclic\" href=\"https:\/\/www.se.edu\/kfrinkle\/wp-content\/uploads\/sites\/89\/2014\/01\/HelloWorldCyclic.zip\" target=\"_blank\" rel=\"noopener\">Hello World Cyclic with Makefile (Zip File)<\/a><\/li>\n<li><a href=\"https:\/\/www.se.edu\/kfrinkle\/wp-content\/uploads\/sites\/89\/2014\/01\/Hello_Worlds_Karl.zip\" target=\"_blank\" rel=\"noopener\">Hello Worlds (Zip File)<\/a><\/li>\n<li><a title=\"Advanced Parallel Matrix Multiplication program\" href=\"https:\/\/www.se.edu\/kfrinkle\/wp-content\/uploads\/sites\/89\/2013\/10\/MatrixDoubleDistribute.zip\" target=\"_blank\" rel=\"noopener\">Matrix Head Node Double Distribute (Zip File)<\/a><\/li>\n<li><a title=\"Matrix Multiplication Module\" href=\"https:\/\/www.se.edu\/kfrinkle\/wp-content\/uploads\/sites\/89\/2013\/10\/MatrixMultiplication.zip\" target=\"_blank\" rel=\"noopener\">Matrix Multiplication Module (Zip File)<\/a><\/li>\n<\/ul>\n<p>&nbsp;<br \/>\nInstructional Documents<\/p>\n<ul>\n<li>Compiling and running programs on fully liberated BCCD cluster: view *<a title=\"Compile and Run on BCCD Fully Liberated Cluster\" href=\"https:\/\/www.se.edu\/kfrinkle\/wp-content\/uploads\/sites\/89\/2015\/01\/CompileAndRunProg.pdf\" target=\"_blank\" rel=\"noopener\">here<\/a>*<\/li>\n<li>Logging on to Kraken: view *<a href=\"https:\/\/www.se.edu\/kfrinkle\/wp-content\/uploads\/sites\/89\/2013\/10\/loggingon.pdf\" target=\"_blank\" rel=\"noopener\">here<\/a>*<\/li>\n<li>Compiling C, C++ and Fortran programs: view *<a href=\"https:\/\/www.se.edu\/kfrinkle\/wp-content\/uploads\/sites\/89\/2013\/10\/compiling.pdf\" target=\"_blank\" rel=\"noopener\">here<\/a>*<\/li>\n<li>Compiling MPI programs: view *<a href=\"https:\/\/www.se.edu\/kfrinkle\/wp-content\/uploads\/sites\/89\/2013\/10\/mpicompiling.pdf\" target=\"_blank\" rel=\"noopener\">here<\/a>*<\/li>\n<li>Running long programs using &#8216;screen&#8217;: view *<a href=\"https:\/\/www.se.edu\/kfrinkle\/wp-content\/uploads\/sites\/89\/2013\/10\/screen.pdf\" target=\"_blank\" rel=\"noopener\">here<\/a>*<\/li>\n<\/ul>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Course Information: Syllabus: view *here* Course Materials: Important Files SSH Secure Shell 3.2.9 &nbsp; Links Creating Shared Directories &nbsp; Genome Links Harvard Personal Genome Project SNPedia &nbsp; Genome Documents To [&hellip;]<\/p>\n","protected":false},"author":42,"featured_media":0,"parent":5270,"menu_order":7,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-5272","page","type-page","status-publish","hentry"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v25.9 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>CS 4973 - Projects in HPC -<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link 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